WhiteLabRt
R package that has function to backcalculate and nowcast line list data in a Bayesian framework for estimation of R_t. Method described in Li and White (2021, Plos Comp Biol). Spearate function to estimate spatially heterogeneous estimates of R_t using mobility data to allow for transmission to occur in locations other than home address. Based…
Wastewater Surveillance network platform
Modeling tools for simulating wastewater analytics and surveillance at airports and environmental sites
Unified COVID-19 Dataset from Johns Hopkins University
Case counts, deaths, vaccines, and government response indicator
Tech Transfer Workshop
Workshop introduced participants to Epydemix, an open-source platform for stochastic epidemic modeling, simulation, and forecasting.
Historical epidemic database
Structured epidemiological data covering the spatiotemporal progression of relevant historical outbreaks and epidemics
Syntetic population
New synthetic population for the U.S. based on 2019 Census Data – includes age, race, ethnicity, gender, and occupation (NAICS code)
Rt Tool navigator
Bookdown that describes different Rt estimation tools for practitioners and has simulator to test methods.
Our World in Data (OWID) data which includes info about case counts, tests, vaccination, and interventions (e.g., social distancing)
Case counts, hospitalization, ICU admissions, tests, vaccination
Origin-Destination Mobility Networks
In progress. Data comprise origin-destination mobility network describing commuting patterns for a sample of users. Current version still in beta testing including only Puerto Rico.
Epistorm