For a strategically-selected three-month period, Ginkgo Biosecurity will provide a “burst” of high-frequency sampling of wastewater from several locations within the MUSC Charleston Division and conduct broad-spectrum sequencing of the retrieved samples using Illumina’s Respiratory Pathogen ID/AMR Enrichment Panel (RPIP). Ginkgo will provide the bioinformatics analysis for the RPIP sequencing, then lead the comparative analysis of sequencing results (viruses, bacteria, and antimicrobial resistant markers).
Additional Resource Information:
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- RPIP sequencing of samples: detection for 40 virus, including full genome coverage of SARS-CoV-2 and Influenza A/B ~150 bacteria, and ~1200 AMR markers, including ESKAPE Pathogens
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Wastewater RNA concentration
Wastewater
- Census block of hospital
- Census block of hospital
- ########
- ########
- Weekly
- Weekly
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- Unknown
*Fields with “—” indicate the center did not provide information at the time of the survey. Please see the resource URL or contact the center if you would like updated information on those fields.
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